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FABA 2Beta --- Functional Analysis By Association
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Genes Associated With Rn.28442 Bbs7
Rat Bardet-Biedl syndrome 7

Query Gene:

Rn.28442 Bbs7 Bardet-Biedl syndrome 7 GeneCard AmiGO Pubmed Google

Top Associated Genes:

  • Rn.98846 Fga Fibrinogen, alpha polypeptide GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.5892 Hla-dmb Major histocompatibility complex, class II, DM beta GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.28195 Gch GTP cyclohydrolase 1 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.20579 Nt5c2l1_predicted 5'-nucleotidase, cytosolic II-like 1 (predicted) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.2490 Il15 Interleukin 15 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.3606 Slc25a3 Solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 3 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.9733 Kcnc2 Potassium voltage gated channel, Shaw-related subfamily, member 2 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.105677 RGD1305243_predicted Similar to hypothetical protein FLJ34389 (predicted) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.1121 Pam Peptidylglycine alpha-amidating monooxygenase GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.11408 Glp1r Glucagon-like peptide 1 receptor GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.9560 LOC294446 Similar to Myristoylated alanine-rich C-kinase substrate (MARCKS) (ACAMP-81) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.3841 Hspb1 Heat shock 27kDa protein 1 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.37733 Pde4b Phosphodiesterase 4B, cAMP specific GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.11116 Renbp Renin binding protein GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.93047 RGD1307722_predicted Similar to hypothetical protein MGC20700 (predicted) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.82692 Ces1 Carboxylesterase 1 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.110861 Ptgdr Prostaglandin D receptor GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.3869 RGD1311873 Similar to hypothetical protein FLJ14466 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.9925 Smgb Neonatal submandibular gland protein B GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.17098 Bin1 Bridging integrator 1 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.100813 Psat1 Phosphoserine aminotransferase 1 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.33815 Apob Apolipoprotein B GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.81196 PRP-2 Proline-rich protein GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.4283 Pla2g1b Phospholipase A2, group IB GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.3617 Transcribed locus

    Datasets Info:

    Rat
    Rat microarray datasets
  • GDS1035 (34 samples) Cardiac myocyte and fibroblast response to various stresses
  • GDS1055 (30 samples) Iron deficiency effect on duodenum: time course (RAE230B)
  • GDS1234 (8 samples) Fibroblast growth factor receptor 3 K650E mutation for type II thanatophoric dysplasia
  • GDS1236 (8 samples) Huntingtin exon 1 protein overexpression
  • GDS1238 (6 samples) Spinal cord contusion
  • GDS1264 (23 samples) Left ventricular hypertrophy in spontaneously hypertensive model: time course
  • GDS1274 (14 samples) Vitamin A deficiency effect on liver
  • GDS1278 (9 samples) Age effect on laryngeal muscle
  • GDS1279 (24 samples) Age effect on extraocular muscles
  • GDS1292 (83 samples) Spinal cord injury effect on supraspinal tracts: time course (RG-U34A)
  • GDS1301 (6 samples) Cardiovascular response to chronic voluntary exercise
  • GDS1307 (10 samples) Various high fat diets effect on liver
  • GDS174 (10 samples) Spermatogenesis regulation
  • GDS238 (10 samples) Skin tumors and vitamin A supplements
  • GDS253 (47 samples) Methylprednisolone effect on liver: time course
  • GDS254 (16 samples) Muscle, normal extraocular, profile
  • GDS256 (51 samples) Pharmacogenomic effect of corticosteroid in skeletal muscle
  • GDS276 (14 samples) Muscle profiles
  • GDS278 (36 samples) Muscle response to acute resistance exercise
  • GDS364 (32 samples) Anesthetic effect on brain
  • GDS366 (18 samples) Necrotizing enterocolitis development
  • GDS399 (11 samples) Cardiac aging
  • GDS489 (24 samples) Cardiac hypertrophy: physiologically and pathologically induced
  • GDS508 (10 samples) Denervation effect on lacrimal gland
  • GDS509 (36 samples) Fracture healing timecourse and the effect of age
  • GDS526 (6 samples) Syracuse high and low avoidance learning comparison
  • GDS599 (10 samples) Burn injury: liver metabolic and inflammatory response
  • GDS621 (36 samples) Extraocular and hindlimb muscle development
  • GDS63 (90 samples) Spinal cord injury and regeneration time course: at T9 (RG-U34A)
  • GDS654 (12 samples) Cardiac hypertrophy induced by exercise
  • GDS656 (18 samples) Retina injury response time course
  • GDS657 (8 samples) Ligament healing and effect of hindlimb unloading
  • GDS699 (9 samples) Spermatogonial stem cell activity time course under various culture conditions (RAE230B)
  • GDS769 (8 samples) Glioma cell migration: comparison of fast and slow invading cells
  • GDS778 (12 samples) Aerobic running capacity: expression profiling of heart ventricles from various strains (RG-U34A)
  • GDS808 (30 samples) Heart ischemia protection: comparison of pharmacologic and ischemic preconditioning
  • GDS869 (55 samples) Spinal cord injury and regeneration time course: below T9 (RG-U34A)
  • GDS872 (52 samples) Spinal cord injury and regeneration time course: above T9 (RG-U34A)
  • GDS955 (30 samples) Early-life kainite-induced seizure effect on brain hippocampus: time course
  • GDS956 (15 samples) Dopamine neurons from substantia nigra pars compacta and ventral tegmental area
  • GDS965 (10 samples) Methylprednisolone effect on kidney: time course (RG-U34A)

    Keys

  • Column: Dataset. Each dataset may contain tens to hundreds of array samples.
  • Row: Gene. The probe sequences for a gene may be different in different datasets.
  • Red color: Positive correlation, i.e., within the dataset (column) the query gene (in the title) and the gene represented in the row show positive correlations in their expressions.
  • Green color: Negative correlation, i.e., within the dataset (column) the query gene (in the title) and the gene represented in the row show negative correlations in their expressions.

    Questions about FABA?

  • Short answer: FABA is in silico two-hybrid software. It fishes for genes with correlated expressions and related functions.
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