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FABA 2Beta --- Functional Analysis By Association
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Genes Associated With Rn.18930 Hps4_predicted
Rat Hermansky-Pudlak syndrome 4 (predicted)

Query Gene:

Rn.18930 Hps4_predicted Hermansky-Pudlak syndrome 4 (predicted) GeneCard AmiGO Pubmed Google

Top Associated Genes:

  • Rn.59788 Trpc5 Transient receptor potential cation channel, subfamily C, member 5 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.10532 Npy5r Neuropeptide Y receptor Y5 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.13745 Camta2_predicted Calmodulin binding transcription activator 2 (predicted) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.12899 RGD735029 SEL1 domain containing protein RGD735029 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.98278 Transcribed locus, strongly similar to NP_758483.1 MAP/microtubule affinity-regulating kinase 4 [Mus musculus]
  • Rn.625 Gstm1 Glutathione S-transferase, mu 1 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.63865 Cdkn2c Cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.104002 Pcsk5 Proprotein convertase subtilisin/kexin type 5 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.43215 Znf444_predicted Zinc finger protein 444 (predicted) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.64787 RGD1307966_predicted Similar to hypothetical protein (predicted) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.10733 Cngb1 Cyclic nucleotide gated channel beta 1 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.140802 RGD1309383 Similar to RIKEN cDNA G630055P03 gene GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.135879 Dibd1_predicted Disrupted in bipolar affective disorder 1 (predicted) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.163747 Transcribed locus
  • Rn.23477 RGD1308908_predicted Similar to KIAA1440 protein (predicted) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.162550 Rasgrf2 RAS protein-specific guanine nucleotide-releasing factor 2 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.11297 Npr3 Natriuretic peptide receptor 3 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.10013 Atp1a4 ATPase, Na+/K+ transporting, alpha 4 polypeptide GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.40979 Xrcc4 X-ray repair cross complementing protein 4 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.11805 Csnk1e Casein kinase 1, epsilon GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.1501 RGD1559787_predicted Similar to serum response factor (predicted) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.23162 RGD1561932_predicted Similar to novel protein (predicted) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.107364 Prss8 Protease, serine, 8 (prostasin) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.12328 Mfap4 Microfibrillar-associated protein 4 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.8976 Transcribed locus
  • Rn.60152 Etfb Electron-transfer-flavoprotein, beta polypeptide GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.7990 Lmbrd1 LMBR1 domain containing 1 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.98315 RGD1306721 Similar to helicase-like protein NHL isoform 2 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.17691 Hps1 Hermansky-Pudlak syndrome 1 homolog (human) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.12987 RGD1310414 Similar to hypothetical protein FLJ23263 GeneCard AmiGO Pubmed Google Pubmed2 Google2

    Datasets Info:

    Rat
    Rat microarray datasets
  • GDS1054 (30 samples) Iron deficiency effect on duodenum: time course (RAE230A)
  • GDS1055 (30 samples) Iron deficiency effect on duodenum: time course (RAE230B)
  • GDS1218 (16 samples) PPARgamma overexpression and activation effect on pancreatic islets
  • GDS1251 (9 samples) Acute hypotension effect on kidneys
  • GDS1280 (18 samples) Age effect on central and peripheral nervous systems
  • GDS1307 (10 samples) Various high fat diets effect on liver
  • GDS698 (9 samples) Spermatogonial stem cell activity time course under various culture conditions (RAE230A)
  • GDS699 (9 samples) Spermatogonial stem cell activity time course under various culture conditions (RAE230B)
  • GDS780 (12 samples) Aerobic running capacity: expression profiling of heart ventricles from various strains (RG-U34C)
  • GDS851 (8 samples) Extraocular muscle: comparison of global and orbital layers
  • GDS871 (43 samples) Spinal cord injury and regeneration time course: below T9 (RG-U34C)
  • GDS874 (48 samples) Spinal cord injury and regeneration time course: above T9 (RG-U34C)
  • GDS905 (25 samples) Pancreatic beta cell lines overexpressing wild type MODY genes or mutant HNF1b alleles
  • GDS954 (11 samples) Ketogenic diet effect on brain hippocampus
  • GDS964 (53 samples) Methylprednisolone effect on kidney: time course (RAE230A)
  • GDS972 (44 samples) Methylprednisolone effect on liver: time course (RAE230A)

    Keys

  • Column: Dataset. Each dataset may contain tens to hundreds of array samples.
  • Row: Gene. The probe sequences for a gene may be different in different datasets.
  • Red color: Positive correlation, i.e., within the dataset (column) the query gene (in the title) and the gene represented in the row show positive correlations in their expressions.
  • Green color: Negative correlation, i.e., within the dataset (column) the query gene (in the title) and the gene represented in the row show negative correlations in their expressions.

    Questions about FABA?

  • Short answer: FABA is in silico two-hybrid software. It fishes for genes with correlated expressions and related functions.
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