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FABA 2Beta --- Functional Analysis By Association
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Genes Associated With Rn.18732 Tssc4
Rat Tumor-suppressing subchromosomal transferable fragment 4

Query Gene:

Rn.18732 Tssc4 Tumor-suppressing subchromosomal transferable fragment 4 GeneCard AmiGO Pubmed Google

Top Associated Genes:

  • Rn.2438 RGD1565597_predicted Similar to RIKEN cDNA 2210421G13 (predicted) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.44692 Pla2g6 Phospholipase A2, group VI GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.3360 Trim47_predicted Tripartite motif protein 47 (predicted) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.162014 RGD1562494_predicted Similar to keratin 6 alpha (predicted) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.37385 Accn2 Amiloride-sensitive cation channel 2, neuronal GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.147642 Akap6 A kinase (PRKA) anchor protein 6 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.48955 Transcribed locus
  • Rn.10739 Cacnb2 Calcium channel, voltage-dependent, beta 2 subunit GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.37575 Tpm3 Tropomyosin 3, gamma GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.163306 Msra Methionine sulfoxide reductase A GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.161948 Rims2 Regulating synaptic membrane exocytosis 2 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.3039 Enc1 Ectodermal-neural cortex 1 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.10398 Prkch Protein kinase C, eta GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.9262 Cdc20 Cell division cycle 20 homolog (S. cerevisiae) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.162481 Brsk2 Brain serine/threonine kinase 2 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.88169 Scarb1 Scavenger receptor class B, member 1 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.91185 LOC360443 Hypothetical gene supported by NM_012720 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.105740 Transcribed locus, strongly similar to XP_217044.2 PREDICTED: similar to lipocalin-interacting membrane receptor [Rattus norvegicus]
  • Rn.4050 Zfp216_predicted Zinc finger protein 216 (predicted) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.81026 Slc26a3 Solute carrier family 26, member 3 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.25030 Transcribed locus, strongly similar to NP_954513.1 secreted and transmembrane 1 [Rattus norvegicus]
  • Rn.162741 Podxl Podocalyxin-like GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.16664 Fen1 Flap structure-specific endonuclease 1 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.89069 Cit Citron GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.162227 Ugcgl1 UDP-glucose ceramide glucosyltransferase-like 1 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.60476 Snip SNAP25-interacting protein GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.48863 Lbp Lipopolysaccharide binding protein GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.60 Ak3 Adenylate kinase 3 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.17150 RGD1564625_predicted Similar to transmembrane protein TM9SF3 (predicted) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Rn.9852 Gpx6 Glutathione peroxidase 6 GeneCard AmiGO Pubmed Google Pubmed2 Google2

    Datasets Info:

    Rat
    Rat microarray datasets
  • GDS1018 (49 samples) Brain hippocampal neurons response to brief preconditioning seizures
  • GDS1054 (30 samples) Iron deficiency effect on duodenum: time course (RAE230A)
  • GDS1218 (16 samples) PPARgamma overexpression and activation effect on pancreatic islets
  • GDS1251 (9 samples) Acute hypotension effect on kidneys
  • GDS1273 (35 samples) Amoxicillin effect on small intestine and colon development: time course
  • GDS1280 (18 samples) Age effect on central and peripheral nervous systems
  • GDS1307 (10 samples) Various high fat diets effect on liver
  • GDS698 (9 samples) Spermatogonial stem cell activity time course under various culture conditions (RAE230A)
  • GDS779 (12 samples) Aerobic running capacity: expression profiling of heart ventricles from various strains (RG-U34B)
  • GDS780 (12 samples) Aerobic running capacity: expression profiling of heart ventricles from various strains (RG-U34C)
  • GDS851 (8 samples) Extraocular muscle: comparison of global and orbital layers
  • GDS905 (25 samples) Pancreatic beta cell lines overexpressing wild type MODY genes or mutant HNF1b alleles
  • GDS954 (11 samples) Ketogenic diet effect on brain hippocampus
  • GDS964 (53 samples) Methylprednisolone effect on kidney: time course (RAE230A)
  • GDS972 (44 samples) Methylprednisolone effect on liver: time course (RAE230A)

    Keys

  • Column: Dataset. Each dataset may contain tens to hundreds of array samples.
  • Row: Gene. The probe sequences for a gene may be different in different datasets.
  • Red color: Positive correlation, i.e., within the dataset (column) the query gene (in the title) and the gene represented in the row show positive correlations in their expressions.
  • Green color: Negative correlation, i.e., within the dataset (column) the query gene (in the title) and the gene represented in the row show negative correlations in their expressions.

    Questions about FABA?

  • Short answer: FABA is in silico two-hybrid software. It fishes for genes with correlated expressions and related functions.
  • Summary
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