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FABA 2Beta --- Functional Analysis By Association
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Genes Associated With Hs.184720 ALMS1
Human Alstrom syndrome 1

Query Gene:

Hs.184720 ALMS1 Alstrom syndrome 1 GeneCard AmiGO Pubmed Google

Top Associated Genes:

  • Hs.445000 PTGER3 Prostaglandin E receptor 3 (subtype EP3) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.407643 PCDH9 Protocadherin 9 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.489786 CFTR Cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.472475 MACF1 Microtubule-actin crosslinking factor 1 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.493919 MPZL1 Myelin protein zero-like 1 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.488293 EGFR Epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.453951 NRG1 Neuregulin 1 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.159799 THRAP2 Thyroid hormone receptor associated protein 2 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.104134 HMX1 Homeo box (H6 family) 1 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.225084 C10orf95 Chromosome 10 open reading frame 95 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.468663 USP34 Ubiquitin specific peptidase 34 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.119889 RAP2C RAP2C, member of RAS oncogene family GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.89404 MSX2 Msh homeo box homolog 2 (Drosophila) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.432121 PRDX2 Peroxiredoxin 2 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.32505 KCNJ4 Potassium inwardly-rectifying channel, subfamily J, member 4 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.355934 SFPQ Splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.76253 ATXN2 Ataxin 2 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.470907 AK2 Adenylate kinase 2 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.368160 PCDHGC3 Protocadherin gamma subfamily A, 12 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.388170 FLJ10534 Hypothetical protein FLJ10534 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.30385 MLLT10 Myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.155204 ZNF174 Zinc finger protein 174 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.127675 CLN8 Chromosome 8 open reading frame 61 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.437211 PDE4C Phosphodiesterase 4C, cAMP-specific (phosphodiesterase E1 dunce homolog, Drosophila) GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.482411 SMA4 Hypothetical protein LOC153561 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.533787 KIAA0286 KIAA0286 protein GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.171825 BHLHB2 Basic helix-loop-helix domain containing, class B, 2 GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.306178 MERTK C-mer proto-oncogene tyrosine kinase GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.269128 PPP2R1B Protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform GeneCard AmiGO Pubmed Google Pubmed2 Google2
  • Hs.368587 PRLR Prolactin receptor GeneCard AmiGO Pubmed Google Pubmed2 Google2

    Datasets Info:

    Breast Cancer & Normal Samples
    Datasets that are related to breast cancer or contain normal samples
  • GDS1050 (13 samples) Valproic acid effect on theca cells (HG-U133A)
  • GDS1051 (13 samples) Valproic acid effect on theca cells (HG-U133B)
  • GDS1087 (30 samples) Normal tissues of diverse types (SHBA)
  • GDS1088 (11 samples) Normal tissues of diverse types (SHDP)
  • GDS1096 (36 samples) Normal tissues of various types
  • GDS1250 (8 samples) Atypical ductal hyperplasia and breast cancer
  • GDS1304 (11 samples) Cigarette smoking effect on small airway epithelium
  • GDS1312 (10 samples) Squamous lung cancer
  • GDS1321 (24 samples) Barrett's metaplasia progression to adenocarcinoma
  • GDS1326 (12 samples) Breast cancer cells reexpressing estrogen receptor alpha response to 17beta-estradiol
  • GDS1329 (49 samples) Molecular apocrine breast tumors
  • GDS261 (12 samples) Asthma exacerbatory factors
  • GDS360 (24 samples) Breast cancer and docetaxel treatment
  • GDS424 (24 samples) Normal human tissue expression profiling (HG-U95C)
  • GDS426 (24 samples) Normal human tissue expression profiling (HG-U95E)
  • GDS483 (9 samples) DACH1-responsive genes
  • GDS484 (10 samples) Uterine fibroid and normal myometrial tissue
  • GDS505 (17 samples) Renal clear cell carcinoma (HG-U133A)
  • GDS507 (17 samples) Renal clear cell carcinoma (HG-U133B)
  • GDS511 (14 samples) Postmortem skeletal muscle
  • GDS651 (37 samples) Heart failure arising from different etiologies
  • GDS707 (30 samples) Aging brain: frontal cortex expression profiles at various ages
  • GDS807 (60 samples) Estrogen positive breast cancer recurrence during tamoxifen therapy: microdissected tumor
  • GDS845 (18 samples) Breast cancer cell line ME16C response to chemotherapeutics: time course
  • GDS846 (19 samples) Breast cancer cell line HME-CC response to chemotherapeutics: time course
  • GDS847 (19 samples) Breast cancer cell line MCF-7 response to chemotherapeutics: time course
  • GDS848 (19 samples) Breast cancer cell line ZR-75-1 response to chemotherapeutics: time course
  • GDS881 (18 samples) Breast cancer and selective estrogen receptor modulators
  • GDS884 (20 samples) Estradiol effect on osteosarcoma cells expressing estrogen receptor alpha or beta: time course
  • GDS901 (12 samples) Estrogen receptor alpha L540Q mutation effect on gene induction by estradiol: time course
  • GDS963 (36 samples) Macular degeneration and dermal fibroblast response to sublethal oxidative stress

    Keys

  • Column: Dataset. Each dataset may contain tens to hundreds of array samples.
  • Row: Gene. The probe sequences for a gene may be different in different datasets.
  • Red color: Positive correlation, i.e., within the dataset (column) the query gene (in the title) and the gene represented in the row show positive correlations in their expressions.
  • Green color: Negative correlation, i.e., within the dataset (column) the query gene (in the title) and the gene represented in the row show negative correlations in their expressions.

    Questions about FABA?

  • Short answer: FABA is in silico two-hybrid software. It fishes for genes with correlated expressions and related functions.
  • Summary
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